Cryptic Seabirds Can Hide From This Scientist, But Not From Her Spy Network

Acoustic monitoring combined with powerful machine learning is giving researchers new insights into the elusive Ashy Storm-Petrel. It's just one way that artificial intelligence can tackle pressing conservation challenges.

On shore, the landing sounds straightforward enough. When we reach Green Rock on this blustery late-September morning, Jonathan Felis will nose the Zodiac up to the island, bump it lightly, and the person poised at the bow will jump onto terra firma. 鈥淚t鈥檚 all about the timing,鈥 he tells us. Bump. And jump.

After cutting four miles north through waves pounding the Northern California coast, we see the island鈥檚 formidable cliffs. Suddenly the bump-and-jump notion seems downright daunting. The inflatable boat heaves, plummeting six feet below the landing spot鈥攁 slippery, barnacle-covered surface supposedly ideal to launch oneself onto from this puny, lurching vessel. Emma Kelsey doesn鈥檛 look fazed; on an upswell she leaps with the powerful grace of a gymnast and sticks the dismount. I jump next, clumsily grasp some sharp protrusions, and haul myself to my feet. Photographer Jim McAuley, gear strapped to his back, goes last. He hits low on the rock and slowly slides down, unable to get purchase. He slips into the water.

While I fight the urge to laugh, U.S. Geological Survey scientists Felis and Kelsey respond professionally. This is, after all, a government operation, we鈥檙e all wearing flotation jackets, and the pair had prepared us for this situation鈥攁nd worse (鈥淚f everyone goes overboard...鈥). As McAuley bobs, Kelsey shouts instructions. Seconds later Felis plucks him out of the Pacific Ocean, drenched but unharmed. 鈥淚 think,鈥 says McAuley, 鈥淚鈥檒l take photos of this island from the boat.鈥

Man down, I follow Kelsey as she scrambles to an alcove above our landing spot, passing empty cormorant nests and stepping over the desiccated remains of Common Murre chicks. After poking around, Kelsey calls, 鈥淕ot it!鈥 She鈥檚 crouched before a sandwich-size, guano-covered box containing an acoustic sensor, a device that has recorded thousands of hours of calling seabirds, barking sea lions, and crashing waves since she placed it here in March.

Each night during her six-month absence from Green Rock, the gadget has recorded a minute of sound for every five. Amid the cacophony it has stored, the biologists are interested in only one sound in particular: the call of Ashy Storm-Petrels, nocturnal, pint-size seabirds from central California to northern Mexico.

Ashies are hardy birds, but they鈥檙e vulnerable to many threats, including predation by rats and gulls on their island breeding grounds and oil spills from the offshore rigs along the state鈥檚 southern coast. And in coming years, climate change could take a big toll; warmer, more acidic oceans , and rising seas threaten to inundate nest sites. Closer monitoring of the birds鈥 health would not only assist in their conservation; because their lives are so tied to the sea, it would also help scientists track how this swath of the Pacific Ocean itself is changing. The only problem: Ashies are among the world鈥檚 most difficult seabirds to study.

That鈥檚 where the recorders come in. Kelsey and Felis are on a multi-week trip to collect the devices they鈥檇 deployed on 22 of the 20,000 outcroppings of the California Coastal National Monument, protected waters along the state鈥檚 1,100-mile shore.

Buried in the sound files is information about where Ashy Storm-Petrels are located and, perhaps, how many are at certain sites. If the scientists can filter through the noise and pinpoint Ashies, over time they could more readily detect changes, such as shifts in when they use breeding sites or even a colony collapse. The challenge is identifying the birds鈥 calls amid thousands of hours of clamor, and then translating the data into estimates of their abundance. It鈥檚 the sort of gargantuan undertaking a grad student might spend years on. They鈥檙e hoping a computer can do it, in a fraction of the time.

Visual counts of Ashy Storm-Petrel breeding colonies by air or boat, the gold standard for seabird surveys, are useless. Biologists have to get on the rocks to look for them.

Ashy storm-petrels spend most of their lives on California鈥檚 cool, open waters consuming small organisms that well up to the surface. Their terrestrial nests鈥攊n crevices on islets and a few caves on sheer cliffs鈥攁re, as we experienced, difficult to access. And they only come out at night. So visual counts of breeding colonies by air or boat, the gold standard for seabird surveys, are useless. To tally Ashies, biologists have to get on the rocks to look for them. Nobody knows if the birds are breeding on Green Rock, for instance. It鈥檚 unlikely because it鈥檚 north of their known range, but the recorders could reveal if they鈥檝e moved up the coast. Prior to our arrival, the island hadn鈥檛 been surveyed in half a decade.

In their quest to monitor the birds, Kelsey and Felis are following in the sure-footed steps of , a biologist who scoured island after islet for three decades in search of breeding colonies. Carter died in 2017 but left behind detailed records of every site with confirmed or suspected storm-petrel nests. (And, helpfully, landing notes.)

That painstaking approach helped reveal the bird鈥檚 range and, combined with catch-and-release surveys at two of the largest breeding colonies, provided a general sketch of the species鈥 movement and population. Yet despite all the effort, scientists still don鈥檛 have a more efficient way to decipher whether the Ashy population鈥攍oosely estimated at around 10,000 individuals鈥攊s changing or what its true abundance is.

鈥淵ou could argue, 鈥榃ell, let鈥檚 just keep funding the Harry approach. Guys going out in little rubber boats jumping on slippery rocks,鈥欌 says Matthew McKown, an ecologist and co-founder of Conservation Metrics, a company that provides automated technologies for wildlife monitoring. 鈥淚鈥檇 say, if you鈥檙e going to be there, drop this gadget off so you can understand what鈥檚 happening the whole season鈥攏ot just the brief window you鈥檙e there.鈥

Acoustic monitoring has long been used to determine whether specific bat or bird species are present in an area. Each one has unique vocalizations, and scientists have traditionally either picked out calls by ear from recordings or used software that transforms noise into spectrograms鈥攑ictures of the sound frequencies鈥攖hat they manually scan for their target species鈥 hallmark signatures.

Forwarded by advances in processing power and machine learning, computers are crunching enormous amounts of data to automate tasks.

With the storm-petrel project, the scientists want to take acoustic analysis to a new level by employing an increasingly powerful tool: artificial intelligence (AI). Pushed forward by advances in processing power and machine learning, computers are now crunching enormous amounts of data to automate tasks scientists have long done manually or struggled to do at all. Using the same AI tools that power Amazon鈥檚 Alexa, Facebook鈥檚 facial-recognition technology, and Google鈥檚 self-driving cars, scientists are speeding and scaling up animal population studies and improving wildlife protections. Computers, for example, can now recognize and count individual animals in photos and safeguard endangered species by predicting where poachers may strike.聽

For Ashies, combining acoustic monitoring with AI means that the daring island excursions scientists have long undertaken won鈥檛 just provide a blip of data from the moment they visit. Over entire breeding seasons they could collect unprecedented insights into how the birds鈥攁nd, by extension, the larger marine ecosystem鈥攁re faring.

To accomplish this, however, McKown must first prove to the Bureau of Land Management, which oversees the monument, USGS, and other agencies that manage Ashy Storm-Petrels and their habitat, that his company鈥檚 technology can reliably identify the bird鈥檚 calls and not confuse the sound of an Ashy with, say, the five other storm-petrel species found regularly in California鈥檚 waters. It鈥檚 no small challenge. Today the most advanced AI still has its limits; even Amazon鈥檚 Alexa and Apple鈥檚 Siri don鈥檛 always get your song request right.

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elis and Kelsey delivered the first season鈥檚 worth of guano-caked acoustic sensor boxes to in late 2017. 鈥淭hey don鈥檛 wash them off,鈥 McKown tells me the following summer when I visit the company鈥檚 offices, a few trailers at the coastal science campus of the University of California, Santa Cruz. There, McKown and his small crew of T-shirt- and flannel-clad analysts walk me through how they鈥檙e transforming recordings into maps of where Ashies are present.

First they compress the audio files and convert them into a half-million spectrogram windows, pictures that each represent a two-second-or-so snippet of sound. Then their algorithm鈥攁 set of steps used to train a computer to identify the bird calls鈥攇oes to work. They could have built a simple algorithm to identify Ashy calls alone, but to improve their accuracy, they鈥檝e developed a more complex one that aims to tease out the calls of 14 species commonly found in the region, including the squeaky sound of an Ashy, the more melodious twitter of a Leach鈥檚 Storm-Petrel, and the screech of a Western Gull. As the model sifts through the spectrograms, it learns the signatures unique to each species and makes more precise deductions. 鈥淚nstead of, is it an Ashy Storm-Petrel or no,鈥 says McKown, 鈥渋t can decide, this is not actually an Ashy Storm-Petrel, it鈥檚 a Leach鈥檚.鈥

Analyzing the 2017 acoustic data鈥8,796 hours, more than a year鈥檚 worth鈥攖ook their 鈥渇ancy data center鈥 a couple of days, says McKown. (He鈥檚 referring to a bathroom closet. Earlier, when I saw a warning sign to keep the closet doors locked at all times, I鈥檇 wondered about their high-security cleaning supplies.) Analyst Kerry Dunleavy then spent three weeks meticulously validating the results, looking at the spectrograms identified as likely Ashies to see if the model was right.

When she finished, the team was thrilled to see that the model had accurately detected Ashies and other storm-petrels at the same sites Carter did. At the handful of sites north of the Ashy Storm-Petrel鈥檚 known range, including Green Rock, it detected Leach鈥檚 Storm-Petrels, but no Ashies. What鈥檚 more, at a few sites where Carter and colleagues found evidence of some type of storm-petrel, such as egg shells or feathers, but no breeding birds, the model named specific species.

Nobody was surprised that the model didn鈥檛 reveal a long-lost Ashy Storm-Petrel breeding colony. 鈥淭heir range is really well described,鈥 says Josh Adams, a USGS biologist who has studied the species for 20-plus years. 鈥淭here鈥檚 no mysterious floating island filled with Ashies out there.鈥 Besides, locating a new colony wasn鈥檛 the aim; it was to determine if AI-powered acoustic monitoring could identify the species. And it can.

But for the approach to be really useful, says Adams, it must help scientists monitor trends. McKown鈥檚 team has proven that the recorders can reveal if and when Ashies are present. The next challenge is using the data to identify how many individuals are at each site. That could shed light not only on overall population trends, but also on whether specific colonies are declining鈥攁 possible indication of food shortages, increased predation, or other emerging threats. AI can鈥檛 make that leap alone; it requires data gathered by old-fashioned fieldwork.

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he best time to capture ashies is during the moon鈥檚 dark phase, when the fine mesh of the mist nets in which biologists snare them is least visible. The best places to go are the two largest breeding colonies: the South Farallones, off the coast of San Francisco, and the Channel Islands, about 30 miles from Santa Barbara. These nocturnal quests underpin existing species estimates.

In June McAuley and I once again join Kelsey in the field. We鈥檙e 600 miles south of Green Rock, accompanied by Adams, her boss, for three nights on Prince, an islet amid the Channel Islands where researchers have been mist-netting Ashies since the 1970s.

The bump-and-jump onto a flat-topped rock is the easy part of navigating this 35-acre landscape. The one small level area serves as a kitchen during the day and Kelsey鈥檚 bed at night. Adams, who spent five summers mist-netting Ashies on Prince in the 2000s, curls around a favorite rock to sleep. McAuley and I hang hammocks from yet more rocks.

The island is more welcoming to birds than people. They鈥檙e everywhere, and the sharp ammoniac odor of guano fills the air. Cormorants dominate one end; Cassin鈥檚 Auklets have an apartment complex of burrows on another. Black Oystercatcher parents squeak frantically as we wash dishes at the landing spot, their intrepid chicks toddling among the rocks. Western Gulls pose a more serious threat. Several are nesting near our designated bathroom area, forcing us to duck and cover while doing our business, or be swiped by dive-bombing adults.

Work begins when the sun goes down. Armed with fresh coffee, at 9 p.m. Adams and Kelsey unfurl the net, set up near the acoustic device, and start playing a recording of the Ashy Storm-Petrel鈥檚 flight call. Within 20 minutes birds attracted by the shrieks become tangled in the mesh. Adams and Kelsey expertly remove and band them, take beak and wing measurements, and release them. At 2 a.m. they stop the recording. In three nights of this they catch 78 Ashies.

To determine the birds鈥 relative abundance at these sites, Adams explains, biologists use a metric called 鈥渃atch per unit effort鈥濃攊n this case, the number of Ashies caught in the five-hour stretch after sunset. CPUE has long been the only technique for tracking changes in their abundance on islands.

Now McKown鈥檚 team is trying to deduce the number of birds on Prince based on the rates of the calls recorded by the gadgets. Then they鈥檒l compare the algorithm鈥檚 results with the number generated by the CPUE formula to see if the two measurements sync up. 鈥淚f there is a correlation鈥攊f catch per unit effort is related to call rates鈥攖hen potentially we could use call rates as a monitoring tool,鈥 says Adams.聽

If they鈥檙e successful, they鈥檒l have unlocked the ability to track changes in the number of birds anywhere there鈥檚 an acoustic recorder, not just at long-term mist-net sites.

In other words, if they鈥檙e successful, they鈥檒l have unlocked the ability to track changes in the number of birds anywhere there鈥檚 an acoustic recorder, not just at the long-term mist-net sites. If they only had to drop off and pick up sensors at the beginning and end of breeding seasons, they could expand monitoring and improve early warning of changes to the species鈥 overall health. 鈥淕etting a better grasp on the population size would be invaluable,鈥 says Channel Islands National Park wildlife biologist David Mazurkiewicz.

On Prince, everyone is exhausted when we close the nets the first night. We all conk out in minutes. Except McAuley. When he lowers himself into his hammock, the bottom scrapes a rock and the material splits, dumping him on the ground.

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onservation Metrics鈥 server crunches data for more than just this project. Analysts are also identifying the vocalizations, and subsequently the range, of Night Parrots, an Australian bird written off as extinct until one was rediscovered in 2006. With camera-trap photos they鈥檙e detecting cats and rats preying on nesting seabirds. They鈥檙e working with Cornell University to map the movement of elephants in the Congo with an eye toward understanding how the endangered mammals react to forestry practices.

The company isn鈥檛 alone in doing this work; countless academic groups, start-ups, and nonprofits deploy AI in conservation. Rice University researchers, for instance, are using AI to predict extreme-weather patterns, which could help governments better prepare for hurricanes and heat waves. There鈥檚 , an animal-world counterpart to Facebook that distinguishes individual zebras by their stripes and whale sharks by their skin patterns. And 探花精选 is exploring whether AI could improve the accuracy and scope of bird surveys and identify critical restoration needs after natural disasters.

鈥淎I is now such a buzzword,鈥 says Fei Fang, a Carnegie Mellon University computer scientist who works on the , an effort to predict locations poachers will target and optimize enforcement patrol routes. It鈥檚 technology, she notes, that isn鈥檛 always used for good and doesn鈥檛 live up to its hype in all cases. But in the field of conservation, where human resources are limited and geographies far-flung, she believes the buzz is real: 鈥淚t can help address the most significant challenges we face.鈥

In all this work, processing huge data streams has become one of the biggest hurdles. Conservation Metrics has been working up against that limit lately. 鈥淲hen we started in 2012, a project had a hundred gigabytes or less,鈥 says McKown. 鈥淣ow we have projects that are bringing in 100 terabytes of data a year. We鈥檙e rapidly bursting at the seams.鈥

Take their Congo elephant project, which has recordings from 52 sensors that run 24 hours a day. The company鈥檚 single server requires three weeks to analyze three months of data. 鈥淚t鈥檚 a bottleneck,鈥 he says.

For many researchers working with AI, closer collaborations with tech companies could dramatically ease the strain. Microsoft鈥檚 five-year, $50 million , started in 2017, recently awarded McKown鈥檚 company a grant; Google launched its own $25 million program last year. 鈥淲e鈥檙e trying to move what happens in the bathroom closet into the cloud,鈥 says McKown. His team began pilot testing this approach with Microsoft鈥檚 cloud-computing platform in January. The effort slashed elephant data analysis to 15 hours from 22 days.

Already AI for Earth has funded more than 200 projects in four areas: biodiversity, climate change, agriculture, and water. Its goal is to make it easier for time- and cash-strapped researchers to store, manage, and analyze enormous amounts of ecological and environmental data, thus informing better conservation decisions. The vision is to put top-notch models created by grantees鈥攁nd their data sets鈥攊n the cloud and provide open access for anyone to use. So a group on the other side of the world could, for instance, use the basic code underlying the storm-petrel models to identify calls of other species.

鈥淣ot every lab or conservation group is going to be spinning up and creating its own AI models,鈥 says AI for Earth project manager Bonnie Lei, a former penguin researcher. 鈥淭his is all toward a vision of truly democratized access, truly easy to use,鈥 she says. 鈥淎nd, fingers crossed, it will truly move the conservation needle.鈥

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rtificial intelligence may be on its way to becoming an indispensable conservation tool, but it isn鈥檛 going to supplant humans. 鈥淲e鈥檙e trying to increase the footprint and the observation power of the Harry Carters of the world,鈥 says McKown. 鈥淭his is not going to replace those people.鈥

We still need rangers on the ground in Uganda to deter and catch poachers, and community scientists who upload photos, essential to Wildbook and other crowdsourced monitoring projects. We also need intrepid researchers like Kelsey and Felis to visit inhospitable environs, knowing the exact rock to jump on to access breeding sites and deploy acoustic devices, and to continue mist-netting to gather age and health data that sound recordings can鈥檛 capture.

The Ashy study ended last year, but Kelsey may soon be back in the Zodiac, bumping and jumping to deploy even more recorders along the West Coast. This winter McKown shared his team鈥檚 success at reliably detecting storm-petrels with a multi-agency group currently crafting the first-ever, range-wide Ashy Storm-Petrel management plan.

The exact protocols, including how many and what kinds of acoustic sensors would be deployed and where, haven鈥檛 been hammered out yet. If these tools are adopted, they could create a network that gathers data about Ashies and other storm-petrels, auklets, and murrelets that share their breeding grounds.

With it, scientists would be in position to glean invaluable insights into how some of the world鈥檚 most cryptic birds are faring, without birds realizing they were there. And if one day changing conditions push Ashies north to Green Rock, they鈥檒l know.

This story originally ran in the Spring 2019 issue 鈥淐ryptic Seabirds Can Hide From This Scientist鈥擝ut Not the Spy Network She Leaves Behind."聽To聽receive our print magazine, become a member by聽.